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CBDD Group
DNA-DNA Features Calculator
Step 1: Calculate DNA features
Upload file (Formats: *.txt, *.TXT)
Upload your file:
Example
Please select feature:
Please select
Basic kmer
Reverse compliment kmer
DAC
DCC
DACC
TAC
TCC
TACC
PseDNC
PseKNC
PC-PseDNC
PC-PseTNC
SC-PseDNC
SC-PseTNC
k value:
lag value:
w value:
lamada value:
Select physicochemical indices:
Base stacking
Protein induced deformability
B-DNA twist
A-philicity
Propeller twist
DNA denaturation
Bending stiffness
Protein DNA twist
Aida_BA_transition
Breslauer_dG
Breslauer_dH
Electron_interaction
Hartman_trans_free_energy
Helix-Coil_transition
Lisser_BZ_transition
Polar_interaction
SantaLucia_dG
SantaLucia_dS
Sarai_flexibility
Stability
Sugimoto_dG
Sugimoto_dH
Sugimoto_dS
Duplex tability(disruptenergy)
Stabilising energy of Z-DNA
Breslauer_dS
Ivanov_BA_transition
SantaLucia_dH
Stacking_energy
Watson-Crick_interaction
Dinucleotide GC Content
Twist
Tilt
Roll
Shift
Slide
Rise
Select physicochemical indices:
Bendability (DNAse)
Bendability (consensus)
Trinucleotide GC Content
Consensus_roll
Consensus-Rigid
Dnase I
MW-Daltons
MW-kg
Nucleosome
Nucleosome positioning
Dnase I-Rigid
Nucleosome-Rigid
Note:
Usage
: Click
here
for help when you meet a problem.
Batch computing limit
:
5000 molecules at one time
.